• Ju Wu, Tingting Mu, Thiyagalingam, John Goulermas, Memory-Aware Attentive Control for Community Question Answering With Knowledge-Based Dual Refinement, IEEE Transactions on Systems, Man, and Cybernetics: Systems. p. 1-14, 2023.
  
• Kamal Choudhary,  Brian DeCost, Lily Major, Keith Butler, Jeyan Thiyagalingam, Francesca Tavazza, Unified graph neural network force-field for the periodic table: solid state applications, Digital Discovery, 2023.
  
• Hu, H., Ye, R., Thiyagalingam, J. et al. Triple-kernel gated attention-based multiple instance learning with contrastive learning for medical image analysis. Appl Intelligence, 2023.
  
• Jinmeng Wu, Tingting Mu, Jeyan Thiyagalingam, John Y. Goulermas, Memory-Aware Attentive Control for Community Question Answering With Knowledge-Based Dual Refinement, IEEE Transactions on Systems, Man, and Cybernetics: Systems, 1-14, 2023​.​​​

• ​Kuangdai Leng, Steve King, Tim Snow, Sarah Rogers, Anders Markvardsen, Satheesh Maheswaran, and Jeyan Thiyagalingam, Parameter Inversion of a Polydisperse System in Small-angle Scattering, Journal of Applied Crystallography, (55)​, 966-977, 2022.​​
• Luisa Lucie-Smith, Hiranya V. Peiris, Andrew Pontzen, Brian Nord, Jeyan Thiyagalingam, and Davide Piras, Discovering the building blocks of dark matter halo density profiles with neural networks, Physical Review D, 105, 103533, 2022.
• Jeyan Thiyagalingam , Mallikarjun Shankar , Geoffrey Fox , and To​ny Hey, Scientific Machine Learning Benchmarks, Nature Reviews Physics, (4), 413–420, 2022.
  
• Ben Henghes,  Jeyan Thiyagalingam, Connor Pettitt, Tony Hey, Ofer Lahav, Deep Learning Methods for Obtaining Photometric Redshift Estimations from Images, Monthly Notices of Royal Astronomical Society (MNRAS), 512(2), 1696–1709, 2022.
• ​​Yuze Huang, Tristan G. Fleming, Samuel J. Clark, Sebastian Marussi, Kamel Fezzaa, Jeyan Thiyagalingam, Chu Lun Alex Leung, Peter D. Lee, Keyhole fluctuation and pore formation mechanisms during laser powder bed fusion additive manufacturing, Nature Communications, (13), 1170, 2022.

2021

• Ben Henghes, Connor Pettitt, Jeyan Thiyagalingam, Tony Hey, Ofer Lahav, Benchmarking and Scalability of Machine Learning Methods for Photometric Redshift Estimation, Monthly Notices of Royal Astronomical Society (MNRAS),  4847-4856, 505 (4), 2021.
• Johannes Allotey,  Keith T. Butler, Jeyan Thiyagalingam, Entropy-based active learning of graph neural network surrogate models for materials properties, Journal of Chemical Physics 155, 174116, 2021​.
  
• Sony Malhotra, Agnel Praveen Joseph, Jeyan Thiyagalingam, Maya Topf, Assessment of protein-protein interfaces in cryo-EM derived assemblies, Nature Communications, 12, 3399 (2021).
• Chunpeng Wang, Feng Yu, Yiyang Liu, Xiaoyun Li, Jeyan Thiyagalingam and Alessandro Sepe, Deploying the Big Data Science Center at the Shanghai Synchrotron Radiation Facility: The First Superfacility Platform in China, IOP Machine Learning for Science and Technology, 2(2021), 035003, 2021.
• K. T. Butler, M. D. Le, J. Thiyagalingam, and T. G. Perring, Interpretable, calibrated neural networks for analysis and understanding of inelastic neutron scattering data, Journal of Physics: Condensed Matter, 33(19),  194006, 2021.
• Karel Adámek, Jan Novotný, Jeyarajan Thiyagalingam, Wesley Armour, Efficiency Near the Edge: Increasing the Energy Efficiency of FFTs on GPUs for Real-time Edge Computing, IEEE Access,  9(2021),  18167-18182, 2021.
• Z. Zhang, K. Cumanan, J.  Thiyagalingam, Y.  Tang, W. Wang, Exploiting Deep Learning for Secure Transmission in an Underlay Cognitive Radio Network, IEEE Transactions on Vehicular Technology,  70(1), 726-741, 2021.
• Siu Lun Yeung, Ratnasingham Tharmarasa, Jeyan Thiyagalingam, A Parallel Retrodiction Algorithm for Large-Scale Multitarget Tracking, IEEE Transactions on Aerospace and Electronic Systems, 57(1), 5-21 ,2021
• B. Akbari, J. Thiyagalingam, R. Lee, T. Kirubarajan, A multilane tracking algorithm using IPDA with Intensity Feature, Sensors, 21(2), 461 ,2021.

2020

• Tony Hey, Jeyarajan Thiyagalingam, Martyn Winn, Melanie Vollmar, AI for Science at Large-Scale Experimental Facilities, Crystallography News, December 2020.
• Haitham Al-Obiedollah, Kanapathippillai Cumanan, Jeyarajan Thiyagalingam, Jie Tang, Alister G. Burr, Zhiguo Ding, and Octavia A. Dobre, Spectral-Energy Efficiency Trade-off-based Beamforming Design for MISO Non-Orthogonal Multiple Access Systems, Transactions on Wireless Communications, Accepted for Publications, June 2020.
• Jinmeng Wu, Tingting Mu, Jeyarajan Thiyagalingam, Yannis Goulermas, Building Interactive Sentence-aware Representation based on Generative Language Model for Community Question Answering, Neurocomputing, Volume 389, 93-107, January 2020. 
• Tony Hey, Keith Butler, Samuel Jackson and Jeyarajan Thiyagalingam, Machine Learning and Big Scientific Data, Philosophical Transactions of the Royal Society A, 378 (2020), 20190054,, 2020. 
  
  

2019 & Pre-2019

• Xinjian Gao, Tingting Mu, John Y. Goulermas, Jeyarajan Thiyagalingam, Meng Wang, An Interpretable Deep Architecture for Similarity Learning Built Upon Hierarchical Concepts, IEEE Transactions on Image Processing, Accepted for Publication, December 2019. 
• Miao Zhang, Kanapathippillai Cumanan, Jeyarajan Thiyagalingam, Wei Wang, Alister G. Burr, Zhiguo Ding, and Octavia A. Dobre, Energy Efficiency Optimization for Secure Transmission in MISO Cognitive Radio Network with Energy Harvesting, IEEE Access, Accepted for Publicaiton, August 2019. 
• Yan Zuo, Ratnasingham Tharmarasa, Rahim Zargani, Nathan Kashyap, Jeyarajan Thiyagalingam, Thia Kirubarajan, MILP Formulation for Aircraf tPath Planning in Persistent Surveillance, IEEE Transactions on Aerospace and Electronic Systems, Accepted for Publication, August 2019.
• Sergi Siso, Wes Armour, Jeyarajan Thiyagalingam, Evaluating Auto-Vectorizing Compilers through Objective Withdrawal of Useful Information, ACM Transactions on Architecture and Code Optimization, Accepted for Publication, August 2019. 
• Haitham Al-Obiedollah, Kanapathippillai Cumanan, Jeyarajan Thiyagalingam, Alister G. Burr, Zhiguo Ding, Octavia A. Dobre,  Energy Efficient Beamforming Design for MISO Non-Orthogonal Multiple Access Systems, IEEE Transactions on Communications, July Accepted for Publication, 2019 
• Fuquan Zhang, Pengcheng Zhao, Jeyarajan Thiyagalingam, Thia Kirubarajan, Terrain-Influenced, Incremental Watchtower Expansion for Wildfire Detection, Science of the Total Environment, Volume 654, 1 March 2019, Pages 164-176.
  

• Yanchun Xie, Jimin Xiao, Kaizhu Huang, Jeyarajan Thiyagalingam, Yao Zhao, Correlation Filter Selection for Visual Tracking Using Reinforcement Learning, IEEE Transactions on Circuits and Systems for Video Technology, Accepted, December 2018 
• Bin Yang, J. Wang, Jeyarajan Thiyagalingam and Thia Kirubarajan, Multi-Object Bayesian Filter with Amplitude Information in Clutter Background, Elsevier Journal of Signal Processing, Volume 152, November 2018, Pages 22-34 
• Haowen Zhou, Jinguan Huang, Feng Lu, Jeyarajan Thiyagalingam and Thia  Kirubarajan, Echo State Kernel Recursive Least Squares Algorithm for Machine Condition Prediction, Mechanical Systems and Signal Processing, Volume 111, October 2018, Pages 68-86.
• Fuquan Zhang, Jeyarajan Thiyagalingam, Thia Kirubarajan, Shuwen Xu, Speed-Adaptive Multi-Copy Routing for Vehicular Delay Tolerant Networks, Future Generation Computer Systems, 2018. 
• Shurui Zhang, Jeyarajan Thiyagalingam, Weixing Sheng, Thia Kirubarajan, Xiaofeng Ma, Low Complexity Adaptive Broadband Beamforming Based on the Non-Uniform Domain Decomposition Method, Elsevier Journal of Signal Processing, 66-75, (151), 2018. ​
  
• Jeyarajan Thiyagalingam, Lykourgos Kekampanos and Simon Maskell, Exact Resampling-based MapReduce Particle Filter, EURASIP Journal of Signal Processing, Nov 2017 
• Brian Duffy, Jeyarajan Thiyagalingam, Simon Walton, Anne Trefethen, David J. Smith, Jackson C. Kirkman-Brown, Eamonn A. Gaffney and Min Chen, Glyph-Based Video Visualization for Semen Analysis, IEEE Transactions on Visualisation and Computer Graphics, 
• Simon Walton, Kai Berger, Jeyarajan Thiyagalingam, Brian Duffy, Hui Fang, Cameron Holloway, Anne E. Trefethen, Min Chen, Visualizing Cardiovascular Magnetic Resonance (CMR) Imagery: Challenges and Opportunities, Journal of Progress in Biophysics and Molecular Biology, 115(2-3):349-58, 2014 
• Min Chen, Simon Walton, Kai Berger, Jeyarajan Thiyagalingam, Brian Duffy, Hui Fang, Cameron Holloway, Anne E. Trefethen, Visual Multiplexing,  EuroVis 2014, Computer Graphics Forum and EuroVis2014, 33(3), 2014. 
• Jeyarajan Thiyagalingam, Brian Duffy, Simon Walton, Min Chen, Complexity Plots, Computer Graphics Forum and EuroVis2013,  32(3), 111-120, 2013. 
• G.R. Mudalige, M.B. Giles, J. Thiyagalingam, I. Reguly, C. Bertolli, P.H.J. Kelly, A.E. Trefethen,  Design and Performance of a High-level Unstructured Mesh Framework on Heterogeneous Parallel Systems, Journal of Parallel Computing,  39(11), 669 - 692, 2013. 
• Anne Trefethen, Jeyarajan Thiyagalingam, Energy-Aware Software: Challenges, Opportunities and Strategies, Journal of Computational Sciences, 4(6), 444–449, 2013.
• Jeyarajan Thiyagalingam, Daniel Goodman, Julia Schnabel, Anne Trefethen, Vicente Grau, On the usage of GPUs for Efficient Motion Estimation in Medical Image Sequences,  Journal of Biomedical Imaging, Volume 2011, Article 137604, pages 1:1-1:15, 2011.
• Thiyagalingam, J., Beckmann, O. and Kelly, P. H. J, Is Morton layout competitive for large two-dimensional arrays yet?. Journal of Concurrency and Computation: Practice and Experience, 18: 1509–1539, 2006.​

• Jaehoon Cha, and Jeyan Thiyagalingam, Orthogonality-Enforced Latent Space in Autoencoders: An Approach to Learning Disentangled Representations, International Conference in Machine Learning (ICML), 2023.​
  
• Samuel Pinilla and Tingting Mu and Neil Bourne and Jeyan Thiyagalingam, Improved Imaging by Invex Regularizers with Global Optima Guarantees, Advances in Neural Information Processing Systems (NeurIPS), 2022.
  
• Daniel White,  Mohammed Jahangur, Michail Antoniou, Christopher Baker, Jeyan Thiyagalingam, Stephen Harman and Cameron Bennett, Multi-rotor Drone Micro-Doppler Simulation Incorporating Genuine Motor Speeds and Validation with L-band Staring Radar, IEEE Radar Conference, 2022​.
• Yuze Huang, Chu Lun Alex  Leung, Samuel J.  Clark, Siu Lun Yeung, Yunhui Chen, Lorna Sinclair, Sebastian Marussi, Kamel Fezzaa, Jeyan Thiyagalingam, Peter D.  Lee, *In situ X-ray Observation and Quantification of Keyhole-induced Porosity during Laser Additive Manufacturing, Symposium on Additive Manufacturing of Metals: Applications of Solidification Fundamentals*,  TMS Annual Meeting & Exhibition, 2021.
  
• Alessandro Varsi, Kekempanos Lykourgos, Jeyarajan Thiyagalingam, Simon Maskell, Parallelising Particle Filters with Deterministic Runtime on Distributed Memory Systems, Accepted, IEE Conference on Intelligent Signal Processing, 2017
• Hui Fang, Jeyarajan Thiyagalingam, Nik Bessis, Eran Edirisinghe, Fast and Reliable Human Action Recognition In Video Sequences By Sequential Analysis, IEEE Conference on Intelligent Image Processing, 2017
• Tarje Nissen-Meyer, Jeyarajan Thiyagalingam, Martin van Driel, Simon Staehler, HPC-scaling and energy consumption of the global seismic wave-propagation code AxiSEM, Geophysical Research Abstracts, Vol. 16, 2014
• Jing Guo, Bob Bernecky, Jeyarajan Thiyagalingam, Sven-Bodo Scholz, Polyhedral Methods for Improving Parallel Update-in-Place, IMPACT 2014, Proceedings of the 4th International Conference in Polyhedral Compilation Techniques, pages 1-9,  2014.
• Albert Solernou, Jeyarajan Thiyagalingam,  Mihai Duta,  Anne Trefethen , The Effect of Topology-Aware Process and Thread Placement on Performance and Energy, International Conference in Supercomputing, 2013, Vol. 7905, pages 357-371,  Lecture Notes in Computer Science, 2013.
• Jeyarajan Thiyagalingam, Anne Trefethen, Mathematical Libraries and Energy Efficiency,  SIAM Conference on Parallel Processing for Scientific Computing (SIAM PP12), Savanah, Georgia, February 2012.
• Jeyarajan Thiyagalingam, Anne Trefethen, Towards Developing Energy-Aware Algorithms, Proceedings of the Many Core, Reconfigurable Supercomputing (MRSC 2011), Bristol, UK, 2011.
• J. Guo, W. Rodrigues, J. Thiyagalingam, F. Guyomarch, S.B. Scholz, P. Boulet, Harnessing the Power of GPUs without Losing Abstractions in   SaC and ArrayOL: A Comparative Study, Proceedings of the HIPS/IPDPS 2011, pages 1183 – 1190, 2011
•  J. Guo, J. Thiyagalingam, S.B. Scholz, Breaking the GPU Programming Barrier with the Auto-Parallelising SAC Compiler, pages 15-24, DAMP 2011.
• J. Guo, J. Thiyagalingam, S.B.Sholz, Towards Compiling SaC to CUDA, Trends in Functional Programming, Vol. (10), Pages 33-48, 2010.
• M. Duta,  J.Thiyagalingam, A. Trefethen, A.Goyal,V. Grau, N. Smith, Parallel Simulation for Parameter Estimation of Optical Tissue Properties, Lecture Notes In Computer Sciences Vol. 6271, pages 51 62, Euro-Par 2010.
• T. Weigold, P. Buhler, J. Thiyagalingam, A. Basukoski, V. Getov, Advanced Grid Programming with Components: A Biometric Identification Case Study, Proceedings of the 32nd IEEE International Conference on Computer Software and Applications (COMPSAC) 2008, pages 401-408, 2008.
• J, Thiyagalingam J., V. Getov, S. Panagiotidi, O. Beckmann, J. Darlington. Domain-Specific Metadata for Model Validation and Performance Optimisation. Achievements in European Research on Grid Systems,  pages. 165-178, 2007.
• J. Thiyagalingam. O. Beckmann, Paul H. J. Kelly, Minimising Associativity Conflicts in Morton Layout, Vol. 3911, Sixth International Conference On Parallel Processing And Applied Mathematics, PPAM-2005.
• J. Thiyagalingam. P. H. J. Kelly, Is Morton Layout Competitive for Large Two Dimensional Arrays? Lecture Notes In Computer Sciences Vol. 2400, pages 280 288, Euro-Par 2002, Paderborn, Germany.
• J. Thiyagalingam. O. Beckmann, P. H. J. Kelly, Improving the Performance of Basic Morton Layout by Array Alignment and Loop Unrolling, Lecture Notes in Computer Sciences,  Vol. 2400, pages 241-257, LCPC 2003, Texas,
• J. Thiyagalingam. O. Beckmann, P. H. J. Kelly, Exhaustive Evaluation of Row-major, Column-major and  Morton Layouts for Large Two-Dimensional Arrays,  Proceedings of the UKPEW 2003, pp 340—351. UKPEW 2003, Warwick, England.
• J. Thiyagalingam. S. Isaiadis, V. Getov, Towards Building a Generic Grid Services Platform: A Component Oriented Approach, In Component Models and Systems for Grid Applications, Proceedings of the ICS 2004, France, pp 39—56, ICS-2004, St. Malo, France.
• A. Basukoski, V. Getov, J. Thiyagalingam, Component-Based Development Environment For Grid: Design And Implementation, To appear in Lecture Notes of Computer Science, The Proceedings of the Annual Core-Grid, 2007, Heraklion, Greece.
• J. Thiyagalingam, V. Getov, A Metadata Extraction Tool for Software Components in Grid Applications, Proceedings of the IEEE Conference in Modern Computing Systems, Sofia, Bulgaria. 2006 .pp 189-196.
• J. Thiyagalingam, N. Parlavantzas, S. Isaiadis, L. Henrio, D. Caromel, V. S. Getov, Proposal for a Lightweight Generic Grid Platform Architecture, Proceedings of the IEEE Symposium on High Performance Distributed Computing 2006,  Paris, France.​